/cemt/A36013_3_lane_gembs/C62GPANXX_5_1

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SAMPLE A36013_3_lane_gembs LANE C62GPANXX_5_1

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 373459400 100.00 % 186729700 100.00 % 186729700 100.00 %
General Reads 369825158 99.03 % 185391740 99.28 % 184433418 98.77 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 31351 0.01 % 15742 0.01 % 15609 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3602891 0.96 % 1322218 0.71 % 2280673 1.22 %
Bisulfite_reads C2T 188074340 50.36 % 94272712 50.49 % 93801628 50.23 %
Bisulfite_reads G2A 181782169 48.68 % 91134770 48.81 % 90647399 48.54 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 155587189
Average Unique 83.32 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 18734568740 39.81 % 8344938449 35.47 % 10389630291 44.16 %
Base Counts Overall C 4651745426 9.89 % 190020793 0.81 % 4461724633 18.96 %
Base Counts Overall G 4717462766 10.03 % 4509262614 19.17 % 208200152 0.88 %
Base Counts Overall T 18577616186 39.48 % 10296708653 43.76 % 8280907533 35.20 %
Base Counts Overall N 374491282 0.80 % 187011691 0.79 % 187479591 0.80 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9949251743984897
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 173937083



Mapping Quality

Mapping Quality Histogram
C62GPANXX_5_1.mapq.png



Read Length

Read Length Reads
125 186729700
125 186729700



Insert Size Plot

Insert Size Histogram
C62GPANXX_5_1.isize.png