/cemt/mapping_coverage/A36013_3_lane_gembs
BACK
SAMPLE A36013_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1142528086 |
100% |
126693063945 |
100% |
| Mapped |
1129319759 |
98.84 % |
125042023070 |
98.70 % |
| Passed |
945656591 |
82.77 % |
102084127070 |
80.58 % |
| NotPassed |
183663168 |
16.08 % |
22957896000 |
18.12 % |
| |
|
|
|
|
| LowMAPQ |
126785504 |
11.10 % |
15848188000 |
12.51 % |
| MateUnmapped |
13208327 |
1.16 % |
1651040875 |
1.30 % |
| Duplicate |
8534778 |
0.75 % |
1066847250 |
0.84 % |
| BadOrientation |
76 |
0.00 % |
9500 |
0.00 % |
| LargeInsertSize |
11168 |
0.00 % |
1396000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
48331642 |
4.23 % |
6041455250 |
4.77 % |
| Unmapped |
13208327 |
1.16 % |
1651040875 |
1.30 % |
Base Level Counts
| Bases |
# |
% |
| Total |
118190380875 |
100% |
| Passed |
97347090299 |
82.36 % |
| Trimmed |
4205203433 |
3.56 % |
| Clipped |
363039424 |
0.31 % |
| Overlapping |
15743214381 |
13.32 % |
| LowQuality |
531833338 |
0.45 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |