/cemt/methylation/A36013_3_lane_gembs

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SAMPLE A36013_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26460897 16616158 62.80 %
NonRefCpG 330085 153701 46.56 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36013_3_lane_gembs_coverage_refCpG.png ./IMG//A36013_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36013_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36013_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36013_3_lane_gembs_quality_refcpg.png ./IMG//A36013_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36013_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4565368 9.20 % 1185220 3.39 % 112072 18.50 % 22019 6.17 %
Intermediate (0.3-0.7) 10124225 20.41 % 5236307 14.98 % 135421 22.36 % 58378 16.35 %
Methylated (0.7-1) 34918517 70.39 % 28536553 81.63 % 358197 59.14 % 276671 77.48 %
Median Methylation 0.840 0.880 0.780 0.870