/cemt/A34409_3_lane_gembs/C62GPANXX_1_1

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SAMPLE A34409_3_lane_gembs LANE C62GPANXX_1_1

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 381261962 100.00 % 190630981 100.00 % 190630981 100.00 %
General Reads 377292849 98.96 % 189098735 99.20 % 188194114 98.72 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 24080 0.01 % 12091 0.01 % 11989 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3945033 1.03 % 1520155 0.80 % 2424878 1.27 %
Bisulfite_reads C2T 192755379 50.56 % 96593714 50.67 % 96161665 50.44 %
Bisulfite_reads G2A 184561550 48.41 % 92517112 48.53 % 92044438 48.28 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 157518655
Average Unique 82.63 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 19096108009 39.75 % 9033184124 37.61 % 10062923885 41.89 %
Base Counts Overall C 4772652226 9.93 % 176830914 0.74 % 4595821312 19.13 %
Base Counts Overall G 4833854231 10.06 % 4631803066 19.28 % 202051165 0.84 %
Base Counts Overall T 18954429705 39.46 % 9986603494 41.58 % 8967826211 37.34 %
Base Counts Overall N 381963041 0.80 % 191082008 0.80 % 190881033 0.79 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9941187227316411
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 178429867



Mapping Quality

Mapping Quality Histogram
C62GPANXX_1_1.mapq.png



Read Length

Read Length Reads
125 190630981
125 190630981



Insert Size Plot

Insert Size Histogram
C62GPANXX_1_1.isize.png