/cemt/mapping_coverage/A34409_3_lane_gembs
BACK
SAMPLE A34409_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1190796620 |
100% |
127540198851 |
100% |
| Mapped |
1178734270 |
98.99 % |
126032405101 |
98.82 % |
| Passed |
962131231 |
80.80 % |
98957025226 |
77.59 % |
| NotPassed |
216603039 |
18.19 % |
27075379875 |
21.23 % |
| |
|
|
|
|
| LowMAPQ |
153542034 |
12.89 % |
19192754250 |
15.05 % |
| MateUnmapped |
12062350 |
1.01 % |
1507793750 |
1.18 % |
| Duplicate |
28626386 |
2.40 % |
3578298250 |
2.81 % |
| BadOrientation |
206 |
0.00 % |
25750 |
0.00 % |
| LargeInsertSize |
21730 |
0.00 % |
2716250 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
34412683 |
2.89 % |
4301585375 |
3.37 % |
| Unmapped |
12062350 |
1.01 % |
1507793750 |
1.18 % |
Base Level Counts
| Bases |
# |
% |
| Total |
120256729000 |
100% |
| Passed |
94353007478 |
78.46 % |
| Trimmed |
4189507850 |
3.48 % |
| Clipped |
196303205 |
0.16 % |
| Overlapping |
21103400569 |
17.55 % |
| LowQuality |
414509898 |
0.34 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |