/cemt/methylation/A36015_3_lane_gembs

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SAMPLE A36015_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26266415 13766320 52.41 %
NonRefCpG 350935 124313 35.42 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36015_3_lane_gembs_coverage_refCpG.png ./IMG//A36015_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36015_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36015_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36015_3_lane_gembs_quality_refcpg.png ./IMG//A36015_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36015_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5028298 10.53 % 1469387 4.92 % 153306 24.14 % 31970 10.07 %
Intermediate (0.3-0.7) 13130881 27.49 % 6386571 21.39 % 180405 28.41 % 75839 23.89 %
Methylated (0.7-1) 29606473 61.98 % 22001875 73.69 % 301291 47.45 % 209684 66.04 %
Median Methylation 0.790 0.840 0.670 0.810