/cemt/A36001_3_lane_gembs

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SAMPLE A36001_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1387488426 100.00 % 693744213 100.00 % 693744213 100.00 %
General Reads 1355404445 97.69 % 681385616 98.22 % 674018829 97.16 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 282879 0.02 % 142216 0.02 % 140663 0.02 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 31801102 2.29 % 12216381 1.76 % 19584721 2.82 %
Bisulfite_reads C2T 692860561 49.94 % 348297387 50.21 % 344563174 49.67 %
Bisulfite_reads G2A 662826763 47.77 % 333230445 48.03 % 329596318 47.51 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 502431937
Average Unique 72.42 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 68982555177 39.46 % 28659846831 32.79 % 40322708346 46.13 %
Base Counts Overall C 17545534827 10.04 % 779609711 0.89 % 16765925116 19.18 %
Base Counts Overall G 17947680525 10.27 % 16973110008 19.42 % 974570517 1.11 %
Base Counts Overall T 68815490531 39.36 % 40267251685 46.07 % 28548238846 32.66 %
Base Counts Overall N 1532280616 0.88 % 731952603 0.84 % 800328013 0.92 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9945014919999499
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 573265179



Mapping Quality

Mapping Quality Histogram
A36001_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36001_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C5L1JANXX_4_1
C46BBANXX_2_1
C5L1JANXX_3_1