/cemt/A36001_3_lane_gembs/C5L1JANXX_3_1

BACK

SAMPLE A36001_3_lane_gembs LANE C5L1JANXX_3_1

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 505351558 100.00 % 252675779 100.00 % 252675779 100.00 %
General Reads 494916675 97.94 % 248491034 98.34 % 246425641 97.53 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 103459 0.02 % 51941 0.02 % 51518 0.02 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 10331424 2.04 % 4132804 1.64 % 6198620 2.45 %
Bisulfite_reads C2T 252962132 50.06 % 127009159 50.27 % 125952973 49.85 %
Bisulfite_reads G2A 242058002 47.90 % 121533816 48.10 % 120524186 47.70 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 183817772
Average Unique 72.75 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 25142822779 39.49 % 10401460948 32.67 % 14741361831 46.30 %
Base Counts Overall C 6380596037 10.02 % 273430653 0.86 % 6107165384 19.18 %
Base Counts Overall G 6535391527 10.26 % 6176392280 19.40 % 358999247 1.13 %
Base Counts Overall T 25059783531 39.36 % 14712819048 46.21 % 10346964483 32.50 %
Base Counts Overall N 555702434 0.87 % 273045225 0.86 % 282657209 0.89 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.994787631273485
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 209685267



Mapping Quality

Mapping Quality Histogram
C5L1JANXX_3_1.mapq.png



Read Length

Read Length Reads
125 252675779
125 252675779



Insert Size Plot

Insert Size Histogram
C5L1JANXX_3_1.isize.png