/cemt/A36001_3_lane_gembs/C5L1JANXX_4_1

BACK

SAMPLE A36001_3_lane_gembs LANE C5L1JANXX_4_1

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 503672174 100.00 % 251836087 100.00 % 251836087 100.00 %
General Reads 493130615 97.91 % 247652186 98.34 % 245478429 97.48 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 102592 0.02 % 51524 0.02 % 51068 0.02 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 10438967 2.07 % 4132377 1.64 % 6306590 2.50 %
Bisulfite_reads C2T 252109552 50.05 % 126608887 50.27 % 125500665 49.83 %
Bisulfite_reads G2A 241123655 47.87 % 121094823 48.08 % 120028832 47.66 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 182986253
Average Unique 72.66 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 25058580602 39.49 % 10368431878 32.68 % 14690148724 46.30 %
Base Counts Overall C 6360438625 10.02 % 275629054 0.87 % 6084809571 19.18 %
Base Counts Overall G 6514285732 10.26 % 6155485237 19.40 % 358800495 1.13 %
Base Counts Overall T 24974627389 39.35 % 14662413465 46.21 % 10312213924 32.50 %
Base Counts Overall N 554761576 0.87 % 269387328 0.85 % 285374248 0.90 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9947622330935725
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 208780492



Mapping Quality

Mapping Quality Histogram
C5L1JANXX_4_1.mapq.png



Read Length

Read Length Reads
125 251836087
125 251836087



Insert Size Plot

Insert Size Histogram
C5L1JANXX_4_1.isize.png