/cemt/mapping_coverage/A36001_3_lane_gembs
BACK
SAMPLE A36001_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1349761913 |
100% |
141203871943 |
100% |
| Mapped |
1328984444 |
98.46 % |
138606688318 |
98.16 % |
| Passed |
999827390 |
74.07 % |
97462056568 |
69.02 % |
| NotPassed |
329157054 |
24.39 % |
41144631750 |
29.14 % |
| |
|
|
|
|
| LowMAPQ |
254249204 |
18.84 % |
31781150500 |
22.51 % |
| MateUnmapped |
20777469 |
1.54 % |
2597183625 |
1.84 % |
| Duplicate |
5806352 |
0.43 % |
725794000 |
0.51 % |
| BadOrientation |
480 |
0.00 % |
60000 |
0.00 % |
| LargeInsertSize |
24216 |
0.00 % |
3027000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
69076802 |
5.12 % |
8634600250 |
6.11 % |
| Unmapped |
20777469 |
1.54 % |
2597183625 |
1.84 % |
Base Level Counts
| Bases |
# |
% |
| Total |
124966082375 |
100% |
| Passed |
92787025971 |
74.25 % |
| Trimmed |
4180064353 |
3.34 % |
| Clipped |
348003501 |
0.28 % |
| Overlapping |
27156022306 |
21.73 % |
| LowQuality |
494966244 |
0.40 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |