/cemt/methylation/A36001_3_lane_gembs

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SAMPLE A36001_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26885712 18416770 68.50 %
NonRefCpG 286600 158334 55.25 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36001_3_lane_gembs_coverage_refCpG.png ./IMG//A36001_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36001_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36001_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36001_3_lane_gembs_quality_refcpg.png ./IMG//A36001_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36001_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 12501006 23.87 % 7657400 18.79 % 151027 28.04 % 78718 21.25 %
Intermediate (0.3-0.7) 12337445 23.56 % 8526563 20.92 % 135648 25.19 % 82708 22.32 %
Methylated (0.7-1) 27523394 52.56 % 24575194 60.29 % 251916 46.77 % 209087 56.43 %
Median Methylation 0.730 0.800 0.650 0.770