/cemt/A36008_3_lane_gembs

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SAMPLE A36008_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1523837092 100.00 % 761918546 100.00 % 761918546 100.00 %
General Reads 1489092313 97.72 % 747641498 98.13 % 741450815 97.31 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 145427 0.01 % 73035 0.01 % 72392 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 34599352 2.27 % 14204013 1.86 % 20395339 2.68 %
Bisulfite_reads C2T 760449322 49.90 % 381799938 50.11 % 378649384 49.70 %
Bisulfite_reads G2A 728788418 47.83 % 365914595 48.03 % 362873823 47.63 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 597390994
Average Unique 78.41 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 76160035653 39.67 % 32658828534 34.02 % 43501207119 45.31 %
Base Counts Overall C 19096245160 9.95 % 885278905 0.92 % 18210966255 18.97 %
Base Counts Overall G 19417624184 10.11 % 18429272296 19.20 % 988351888 1.03 %
Base Counts Overall T 75597150254 39.37 % 43264697256 45.07 % 32332452998 33.68 %
Base Counts Overall N 1732418341 0.90 % 763659805 0.80 % 968758536 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9930462424812619
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 674489185



Mapping Quality

Mapping Quality Histogram
A36008_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36008_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C418TANXX_6_1
C418TANXX_5_1
C46BBANXX_5_1