/cemt/mapping_coverage/A36008_3_lane_gembs
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SAMPLE A36008_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1473812022 |
100% |
154286240892 |
100% |
| Mapped |
1452046627 |
98.52 % |
151565566517 |
98.24 % |
| Passed |
1171233973 |
79.47 % |
116463984767 |
75.49 % |
| NotPassed |
280812654 |
19.05 % |
35101581750 |
22.75 % |
| |
|
|
|
|
| LowMAPQ |
207835048 |
14.10 % |
25979381000 |
16.84 % |
| MateUnmapped |
21765395 |
1.48 % |
2720674375 |
1.76 % |
| Duplicate |
15407726 |
1.05 % |
1925965750 |
1.25 % |
| BadOrientation |
330 |
0.00 % |
41250 |
0.00 % |
| LargeInsertSize |
17232 |
0.00 % |
2154000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
57552318 |
3.90 % |
7194039750 |
4.66 % |
| Unmapped |
21765395 |
1.48 % |
2720674375 |
1.76 % |
Base Level Counts
| Bases |
# |
% |
| Total |
146392054625 |
100% |
| Passed |
110917159402 |
75.77 % |
| Trimmed |
4945816671 |
3.38 % |
| Clipped |
344536610 |
0.24 % |
| Overlapping |
29583533248 |
20.21 % |
| LowQuality |
601008694 |
0.41 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |