/cemt/methylation/A36008_3_lane_gembs

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SAMPLE A36008_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26907814 18889017 70.20 %
NonRefCpG 283873 165999 58.48 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36008_3_lane_gembs_coverage_refCpG.png ./IMG//A36008_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36008_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36008_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36008_3_lane_gembs_quality_refcpg.png ./IMG//A36008_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36008_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10798842 20.57 % 6387471 15.44 % 124125 23.24 % 62758 16.59 %
Intermediate (0.3-0.7) 12688389 24.17 % 8920971 21.57 % 137699 25.78 % 86293 22.81 %
Methylated (0.7-1) 29006756 55.26 % 26050146 62.99 % 272344 50.98 % 229251 60.60 %
Median Methylation 0.750 0.810 0.710 0.800