/cemt/mapping_coverage/A36017_3_lane_gembs
BACK
SAMPLE A36017_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1295644098 |
100% |
139457202017 |
100% |
| Mapped |
1275932080 |
98.48 % |
136993199767 |
98.23 % |
| Passed |
1018373879 |
78.60 % |
104798424642 |
75.15 % |
| NotPassed |
257558201 |
19.88 % |
32194775125 |
23.09 % |
| |
|
|
|
|
| LowMAPQ |
176505976 |
13.62 % |
22063247000 |
15.82 % |
| MateUnmapped |
19712018 |
1.52 % |
2464002250 |
1.77 % |
| Duplicate |
11862181 |
0.92 % |
1482772625 |
1.06 % |
| BadOrientation |
190 |
0.00 % |
23750 |
0.00 % |
| LargeInsertSize |
18470 |
0.00 % |
2308750 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
69171384 |
5.34 % |
8646423000 |
6.20 % |
| Unmapped |
19712018 |
1.52 % |
2464002250 |
1.77 % |
Base Level Counts
| Bases |
# |
% |
| Total |
127282202375 |
100% |
| Passed |
99876163614 |
78.47 % |
| Trimmed |
4381539172 |
3.44 % |
| Clipped |
454076882 |
0.36 % |
| Overlapping |
22029700851 |
17.31 % |
| LowQuality |
540721856 |
0.42 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |