/cemt/methylation/A36017_3_lane_gembs

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SAMPLE A36017_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26704851 17281928 64.71 %
NonRefCpG 316769 156574 49.43 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36017_3_lane_gembs_coverage_refCpG.png ./IMG//A36017_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36017_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36017_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36017_3_lane_gembs_quality_refcpg.png ./IMG//A36017_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36017_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4777857 9.41 % 1388988 3.79 % 104031 17.70 % 23019 6.33 %
Intermediate (0.3-0.7) 10499740 20.68 % 5772931 15.75 % 131566 22.38 % 61539 16.93 %
Methylated (0.7-1) 35483102 69.90 % 29492514 80.46 % 352315 59.93 % 278887 76.73 %
Median Methylation 0.840 0.880 0.790 0.870