/cemt/A36003_3_lane_gembs

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SAMPLE A36003_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1433465546 100.00 % 716732773 100.00 % 716732773 100.00 %
General Reads 1406252448 98.10 % 706551077 98.58 % 699701371 97.62 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 63284 0.00 % 31787 0.00 % 31497 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27149814 1.89 % 10149909 1.42 % 16999905 2.37 %
Bisulfite_reads C2T 719047164 50.16 % 361252030 50.40 % 357795134 49.92 %
Bisulfite_reads G2A 687268568 47.94 % 345330834 48.18 % 341937734 47.71 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 570351297
Average Unique 79.58 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 71403911427 39.53 % 31729482210 35.13 % 39674429217 43.93 %
Base Counts Overall C 18116156974 10.03 % 823240695 0.91 % 17292916279 19.15 %
Base Counts Overall G 18215534256 10.09 % 17380084555 19.25 % 835449701 0.93 %
Base Counts Overall T 71300456066 39.48 % 39656194477 43.91 % 31644261589 35.04 %
Base Counts Overall N 1580600073 0.88 % 719327461 0.80 % 861272612 0.95 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9938285838017523
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 644771904



Mapping Quality

Mapping Quality Histogram
A36003_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36003_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C418TANXX_3_1
C418TANXX_4_1
C46BBANXX_3_1