/cemt/mapping_coverage/A36003_3_lane_gembs
BACK
SAMPLE A36003_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1397966822 |
100% |
145431213578 |
100% |
| Mapped |
1378815581 |
98.63 % |
143037308453 |
98.35 % |
| Passed |
1130377909 |
80.86 % |
111982599453 |
77.00 % |
| NotPassed |
248437672 |
17.77 % |
31054709000 |
21.35 % |
| |
|
|
|
|
| LowMAPQ |
192689300 |
13.78 % |
24086162500 |
16.56 % |
| MateUnmapped |
19151241 |
1.37 % |
2393905125 |
1.65 % |
| Duplicate |
8357073 |
0.60 % |
1044634125 |
0.72 % |
| BadOrientation |
294 |
0.00 % |
36750 |
0.00 % |
| LargeInsertSize |
15506 |
0.00 % |
1938250 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
47375499 |
3.39 % |
5921937375 |
4.07 % |
| Unmapped |
19151241 |
1.37 % |
2393905125 |
1.65 % |
Base Level Counts
| Bases |
# |
% |
| Total |
141289395000 |
100% |
| Passed |
106713335253 |
75.53 % |
| Trimmed |
4740588742 |
3.36 % |
| Clipped |
299871521 |
0.21 % |
| Overlapping |
29006924026 |
20.53 % |
| LowQuality |
528675458 |
0.37 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |