/cemt/methylation/A36003_3_lane_gembs

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SAMPLE A36003_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26790485 18502667 69.06 %
NonRefCpG 311483 167594 53.81 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36003_3_lane_gembs_coverage_refCpG.png ./IMG//A36003_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36003_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36003_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36003_3_lane_gembs_quality_refcpg.png ./IMG//A36003_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36003_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4301322 8.40 % 1275142 3.28 % 94603 16.31 % 21346 5.59 %
Intermediate (0.3-0.7) 10401638 20.32 % 6132895 15.76 % 124740 21.51 % 63184 16.54 %
Methylated (0.7-1) 36479282 71.27 % 31494046 80.96 % 360559 62.18 % 297440 77.87 %
Median Methylation 0.850 0.880 0.800 0.870