/cemt/mapping_coverage/A36315_3_lane_gembs
BACK
SAMPLE A36315_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
867329083 |
100% |
92291535251 |
100% |
| Mapped |
856619504 |
98.77 % |
90952837876 |
98.55 % |
| Passed |
656837744 |
75.73 % |
65980117876 |
71.49 % |
| NotPassed |
199781760 |
23.03 % |
24972720000 |
27.06 % |
| |
|
|
|
|
| LowMAPQ |
153231688 |
17.67 % |
19153961000 |
20.75 % |
| MateUnmapped |
10709579 |
1.23 % |
1338697375 |
1.45 % |
| Duplicate |
8865073 |
1.02 % |
1108134125 |
1.20 % |
| BadOrientation |
504 |
0.00 % |
63000 |
0.00 % |
| LargeInsertSize |
22812 |
0.00 % |
2851500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
37661683 |
4.34 % |
4707710375 |
5.10 % |
| Unmapped |
10709579 |
1.23 % |
1338697375 |
1.45 % |
Base Level Counts
| Bases |
# |
% |
| Total |
82091912500 |
100% |
| Passed |
62835212850 |
76.54 % |
| Trimmed |
2874497511 |
3.50 % |
| Clipped |
185652765 |
0.23 % |
| Overlapping |
15926141859 |
19.40 % |
| LowQuality |
270407515 |
0.33 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |