/cemt/methylation/A36315_3_lane_gembs

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SAMPLE A36315_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26183669 8253554 31.52 %
NonRefCpG 380206 73736 19.39 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36315_3_lane_gembs_coverage_refCpG.png ./IMG//A36315_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36315_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36315_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36315_3_lane_gembs_quality_refcpg.png ./IMG//A36315_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36315_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9591519 20.30 % 2425748 11.98 % 235588 34.19 % 43054 18.79 %
Intermediate (0.3-0.7) 14305846 30.28 % 4677527 23.10 % 210228 30.51 % 60159 26.25 %
Methylated (0.7-1) 23347481 49.42 % 13149726 64.93 % 243322 35.31 % 125932 54.96 %
Median Methylation 0.690 0.810 0.510 0.740