/cemt/A34406_3_lane_gembs

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SAMPLE A34406_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1457602892 100.00 % 728801446 100.00 % 728801446 100.00 %
General Reads 1437536923 98.62 % 721595006 99.01 % 715941917 98.24 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 44114 0.00 % 22124 0.00 % 21990 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 20021855 1.37 % 7184316 0.99 % 12837539 1.76 %
Bisulfite_reads C2T 734516996 50.39 % 368624866 50.58 % 365892130 50.20 %
Bisulfite_reads G2A 703064041 48.23 % 352992264 48.43 % 350071777 48.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 592538000
Average Unique 81.30 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 72996474918 39.75 % 34325024988 37.38 % 38671449930 42.11 %
Base Counts Overall C 18198376540 9.91 % 765249659 0.83 % 17433126881 18.98 %
Base Counts Overall G 18292148405 9.96 % 17501082560 19.06 % 791065845 0.86 %
Base Counts Overall T 72693573065 39.58 % 38506718076 41.93 % 34186854989 37.23 %
Base Counts Overall N 1477391464 0.80 % 730906913 0.80 % 746484551 0.81 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9933501957161716
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 670619734



Mapping Quality

Mapping Quality Histogram
A34406_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A34406_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C46APANXX_4_1
C4154ANXX_3_1
C4154ANXX_4_1