/cemt/mapping_coverage/A34406_3_lane_gembs
BACK
SAMPLE A34406_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1415778123 |
100% |
149458114753 |
100% |
| Mapped |
1399102738 |
98.82 % |
147373691628 |
98.61 % |
| Passed |
1147943801 |
81.08 % |
115978824503 |
77.60 % |
| NotPassed |
251158937 |
17.74 % |
31394867125 |
21.01 % |
| |
|
|
|
|
| LowMAPQ |
186919282 |
13.20 % |
23364910250 |
15.63 % |
| MateUnmapped |
16675385 |
1.18 % |
2084423125 |
1.39 % |
| Duplicate |
21856795 |
1.54 % |
2732099375 |
1.83 % |
| BadOrientation |
316 |
0.00 % |
39500 |
0.00 % |
| LargeInsertSize |
23344 |
0.00 % |
2918000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
42359200 |
2.99 % |
5294900000 |
3.54 % |
| Unmapped |
16675385 |
1.18 % |
2084423125 |
1.39 % |
Base Level Counts
| Bases |
# |
% |
| Total |
143482602750 |
100% |
| Passed |
110532625622 |
77.04 % |
| Trimmed |
4871688778 |
3.40 % |
| Clipped |
276765179 |
0.19 % |
| Overlapping |
27227013068 |
18.98 % |
| LowQuality |
574510103 |
0.40 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |