/cemt/methylation/A34406_3_lane_gembs

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SAMPLE A34406_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26131107 14198610 54.34 %
NonRefCpG 275493 59338 21.54 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A34406_3_lane_gembs_coverage_refCpG.png ./IMG//A34406_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A34406_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A34406_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A34406_3_lane_gembs_quality_refcpg.png ./IMG//A34406_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A34406_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4696244 9.89 % 1170927 3.90 % 156471 31.85 % 25664 13.64 %
Intermediate (0.3-0.7) 11208871 23.60 % 5150901 17.17 % 138357 28.16 % 43933 23.36 %
Methylated (0.7-1) 31585648 66.51 % 23675457 78.93 % 196523 40.00 % 118511 63.00 %
Median Methylation 0.820 0.870 0.570 0.800