/cemt/mapping_coverage/A36004_3_lane_gembs
BACK
SAMPLE A36004_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1425566450 |
100% |
154879695060 |
100% |
| Mapped |
1409172288 |
98.85 % |
152830424810 |
98.68 % |
| Passed |
1153757804 |
80.93 % |
120903614310 |
78.06 % |
| NotPassed |
255414484 |
17.92 % |
31926810500 |
20.61 % |
| |
|
|
|
|
| LowMAPQ |
188126314 |
13.20 % |
23515789250 |
15.18 % |
| MateUnmapped |
16394162 |
1.15 % |
2049270250 |
1.32 % |
| Duplicate |
14753622 |
1.03 % |
1844202750 |
1.19 % |
| BadOrientation |
232 |
0.00 % |
29000 |
0.00 % |
| LargeInsertSize |
31344 |
0.00 % |
3918000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
52502972 |
3.68 % |
6562871500 |
4.24 % |
| Unmapped |
16394162 |
1.15 % |
2049270250 |
1.32 % |
Base Level Counts
| Bases |
# |
% |
| Total |
144204101125 |
100% |
| Passed |
115237912247 |
79.91 % |
| Trimmed |
5174903352 |
3.59 % |
| Clipped |
258356964 |
0.18 % |
| Overlapping |
23042129851 |
15.98 % |
| LowQuality |
490798711 |
0.34 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |