/cemt/methylation/A36004_3_lane_gembs

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SAMPLE A36004_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26556852 16863201 63.50 %
NonRefCpG 349477 154841 44.31 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36004_3_lane_gembs_coverage_refCpG.png ./IMG//A36004_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36004_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36004_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36004_3_lane_gembs_quality_refcpg.png ./IMG//A36004_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36004_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3490624 7.06 % 897005 2.58 % 127244 19.92 % 23203 6.42 %
Intermediate (0.3-0.7) 9101077 18.41 % 4465255 12.85 % 134292 21.02 % 52391 14.50 %
Methylated (0.7-1) 36830437 74.52 % 29396973 84.57 % 377237 59.06 % 285760 79.08 %
Median Methylation 0.870 0.900 0.790 0.890