/EXTERNAL BLUEPRINT/K010500_1_lane_gembs

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SAMPLE K010500_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1151386574 100.00 % 575693287 100.00 % 575693287 100.00 %
General Reads 1113676744 96.72 % 558516392 97.02 % 555160352 96.43 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 18210868 1.58 % 9121262 1.58 % 9089606 1.58 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 19498962 1.69 % 8055633 1.40 % 11443329 1.99 %
Bisulfite_reads C2T 597570010 51.90 % 299712885 52.06 % 297857125 51.74 %
Bisulfite_reads G2A 534317602 46.41 % 267924769 46.54 % 266392833 46.27 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 447987105
Average Unique 77.82 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 41890198058 35.67 % 16633781561 28.33 % 25256416497 43.01 %
Base Counts Overall C 16196766756 13.79 % 784972462 1.34 % 15411794294 26.25 %
Base Counts Overall G 16440979032 14.00 % 15678907885 26.70 % 762071147 1.30 %
Base Counts Overall T 41655977090 35.47 % 25042451767 42.65 % 16613525323 28.29 %
Base Counts Overall N 1257509612 1.07 % 580601599 0.99 % 676908013 1.15 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9993264060523314
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 544838915



Mapping Quality

Mapping Quality Histogram
K010500_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K010500_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K010500_1798742_2