/EXTERNAL BLUEPRINT/K006331_15_lane_gembs

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SAMPLE K006331_15_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1221419746 100.00 % 610709873 100.00 % 610709873 100.00 %
General Reads 1177821794 96.43 % 590698768 96.72 % 587123026 96.14 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 20738217 1.70 % 10388477 1.70 % 10349740 1.69 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 22859735 1.87 % 9622628 1.58 % 13237107 2.17 %
Bisulfite_reads C2T 639732078 52.38 % 320927559 52.55 % 318804519 52.20 %
Bisulfite_reads G2A 558827933 45.75 % 280159686 45.87 % 278668247 45.63 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 453186128
Average Unique 74.21 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43534802989 34.94 % 17848437935 28.65 % 25686365054 41.24 %
Base Counts Overall C 18102066484 14.53 % 923685919 1.48 % 17178380565 27.58 %
Base Counts Overall G 18318615952 14.70 % 17408847735 27.95 % 909768217 1.46 %
Base Counts Overall T 43299094042 34.75 % 25495427354 40.93 % 17803666688 28.58 %
Base Counts Overall N 1330234625 1.07 % 616008103 0.99 % 714226522 1.15 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9993325015771382
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 572153649



Mapping Quality

Mapping Quality Histogram
K006331_15_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006331_15_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S00DM8.Bisulfite-Seq.DNA_Methylation.EGAX00001236268_15