/EXTERNAL BLUEPRINT/mapping_coverage/K006331_15_lane_gembs
BACK
SAMPLE K006331_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1159050251 |
100% |
101230854680 |
100% |
| Mapped |
1146599906 |
98.93 % |
99973369835 |
98.76 % |
| Passed |
859135769 |
74.12 % |
70939491998 |
70.08 % |
| NotPassed |
287464137 |
24.80 % |
29033877837 |
28.68 % |
| |
|
|
|
|
| LowMAPQ |
244587856 |
21.10 % |
24703373456 |
24.40 % |
| MateUnmapped |
12450345 |
1.07 % |
1257484845 |
1.24 % |
| Duplicate |
18822568 |
1.62 % |
1901079368 |
1.88 % |
| BadOrientation |
70 |
0.00 % |
7070 |
0.00 % |
| LargeInsertSize |
49084 |
0.00 % |
4957484 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
24004559 |
2.07 % |
2424460459 |
2.39 % |
| Unmapped |
12450345 |
1.07 % |
1257484845 |
1.24 % |
Base Level Counts
| Bases |
# |
% |
| Total |
86766699735 |
100% |
| Passed |
66721234612 |
76.90 % |
| Trimmed |
3597643300 |
4.15 % |
| Clipped |
122747186 |
0.14 % |
| Overlapping |
15704460551 |
18.10 % |
| LowQuality |
620614086 |
0.72 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |