/EXTERNAL BLUEPRINT/methylation/K006331_15_lane_gembs

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SAMPLE K006331_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26453569 19487016 73.66 %
NonRefCpG 340323 143110 42.05 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006331_15_lane_gembs_coverage_refCpG.png ./IMG//K006331_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006331_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006331_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006331_15_lane_gembs_quality_refcpg.png ./IMG//K006331_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006331_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5607588 12.35 % 4011477 10.90 % 102128 18.56 % 24945 8.22 %
Intermediate (0.3-0.7) 6784294 14.95 % 4190359 11.39 % 124447 22.62 % 46016 15.16 %
Methylated (0.7-1) 32996996 72.70 % 28587273 77.71 % 323689 58.82 % 232531 76.62 %
Median Methylation 0.870 0.890 0.780 0.880