/EXTERNAL BLUEPRINT/K006327_15_lane_gembs

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SAMPLE K006327_15_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1171194376 100.00 % 585597188 100.00 % 585597188 100.00 %
General Reads 1134434616 96.86 % 568682331 97.11 % 565752285 96.61 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 18081945 1.54 % 9056123 1.55 % 9025822 1.54 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 18677815 1.59 % 7858734 1.34 % 10819081 1.85 %
Bisulfite_reads C2T 612472522 52.29 % 307103040 52.44 % 305369482 52.15 %
Bisulfite_reads G2A 540044039 46.11 % 270635414 46.22 % 269408625 46.01 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 446624859
Average Unique 76.27 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 41967260142 35.13 % 17016009918 28.49 % 24951250224 41.77 %
Base Counts Overall C 17207376633 14.40 % 869145107 1.46 % 16338231526 27.35 %
Base Counts Overall G 17361585623 14.53 % 16510115641 27.64 % 851469982 1.43 %
Base Counts Overall T 41710205061 34.92 % 24745540322 41.43 % 16964664739 28.40 %
Base Counts Overall N 1215398893 1.02 % 590102188 0.99 % 625296705 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9993219241549175
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 554587777



Mapping Quality

Mapping Quality Histogram
K006327_15_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006327_15_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S007G7.Bisulfite-Seq.DNA_Methylation.EGAX00001236262_15