/EXTERNAL BLUEPRINT/mapping_coverage/K006327_15_lane_gembs
BACK
SAMPLE K006327_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1120380159 |
100% |
97288782423 |
100% |
| Mapped |
1109964049 |
99.07 % |
96236755313 |
98.92 % |
| Passed |
857536291 |
76.54 % |
70741551755 |
72.71 % |
| NotPassed |
252427758 |
22.53 % |
25495203558 |
26.21 % |
| |
|
|
|
|
| LowMAPQ |
219712996 |
19.61 % |
22191012596 |
22.81 % |
| MateUnmapped |
10416110 |
0.93 % |
1052027110 |
1.08 % |
| Duplicate |
14086164 |
1.26 % |
1422702564 |
1.46 % |
| BadOrientation |
78 |
0.00 % |
7878 |
0.00 % |
| LargeInsertSize |
30294 |
0.00 % |
3059694 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
18598226 |
1.66 % |
1878420826 |
1.93 % |
| Unmapped |
10416110 |
0.93 % |
1052027110 |
1.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
86606059740 |
100% |
| Passed |
66584821975 |
76.88 % |
| Trimmed |
3565362080 |
4.12 % |
| Clipped |
96492753 |
0.11 % |
| Overlapping |
15768015232 |
18.21 % |
| LowQuality |
591367700 |
0.68 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |