/EXTERNAL BLUEPRINT/methylation/K006327_15_lane_gembs

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SAMPLE K006327_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26412645 19842440 75.12 %
NonRefCpG 340275 149371 43.90 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006327_15_lane_gembs_coverage_refCpG.png ./IMG//K006327_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006327_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006327_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006327_15_lane_gembs_quality_refcpg.png ./IMG//K006327_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006327_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5354636 11.86 % 3862393 10.44 % 95355 17.45 % 23363 7.56 %
Intermediate (0.3-0.7) 6266342 13.88 % 3898659 10.54 % 118738 21.73 % 43719 14.15 %
Methylated (0.7-1) 33525362 74.26 % 29230892 79.02 % 332242 60.81 % 241886 78.29 %
Median Methylation 0.880 0.900 0.800 0.890