/EXTERNAL BLUEPRINT/mapping_coverage/K006340_12_lane_gembs
BACK
SAMPLE K006340_12_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1052949554 |
100% |
92154884100 |
100% |
| Mapped |
1041592706 |
98.92 % |
91007842452 |
98.76 % |
| Passed |
844464232 |
80.20 % |
71097866578 |
77.15 % |
| NotPassed |
197128474 |
18.72 % |
19909975874 |
21.60 % |
| |
|
|
|
|
| LowMAPQ |
171717496 |
16.31 % |
17343467096 |
18.82 % |
| MateUnmapped |
11356848 |
1.08 % |
1147041648 |
1.24 % |
| Duplicate |
11613830 |
1.10 % |
1172996830 |
1.27 % |
| BadOrientation |
34 |
0.00 % |
3434 |
0.00 % |
| LargeInsertSize |
15032 |
0.00 % |
1518232 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13782082 |
1.31 % |
1391990282 |
1.51 % |
| Unmapped |
11356848 |
1.08 % |
1147041648 |
1.24 % |
Base Level Counts
| Bases |
# |
% |
| Total |
85286197497 |
100% |
| Passed |
66814264719 |
78.34 % |
| Trimmed |
3565343530 |
4.18 % |
| Clipped |
97861019 |
0.11 % |
| Overlapping |
14090469900 |
16.52 % |
| LowQuality |
718258329 |
0.84 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |