/EXTERNAL BLUEPRINT/methylation/K006340_12_lane_gembs

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SAMPLE K006340_12_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26557141 20592068 77.54 %
NonRefCpG 329870 156379 47.41 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006340_12_lane_gembs_coverage_refCpG.png ./IMG//K006340_12_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006340_12_lane_gembs_coverage_nonRefCpG.png ./IMG//K006340_12_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006340_12_lane_gembs_quality_refcpg.png ./IMG//K006340_12_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006340_12_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6081866 12.89 % 4523320 11.37 % 100373 18.10 % 28540 8.48 %
Intermediate (0.3-0.7) 6900872 14.63 % 4672414 11.74 % 119008 21.46 % 51236 15.22 %
Methylated (0.7-1) 34188715 72.48 % 30596969 76.89 % 335050 60.43 % 256897 76.30 %
Median Methylation 0.860 0.880 0.800 0.870