/EXTERNAL BLUEPRINT/K006384_K006397_20_lane_gembs/UMCG00015.Bisulfite-Seq.DNA_Methylation.EGAX00001345069_9

BACK

SAMPLE K006384_K006397_20_lane_gembs LANE UMCG00015.Bisulfite-Seq.DNA_Methylation.EGAX00001345069_9

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 839097030 100.00 % 419548515 100.00 % 419548515 100.00 %
General Reads 819425563 97.66 % 411441752 98.07 % 407983811 97.24 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5477340 0.65 % 2747683 0.65 % 2729657 0.65 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14194127 1.69 % 5359080 1.28 % 8835047 2.11 %
Bisulfite_reads C2T 421720679 50.26 % 211731445 50.47 % 209989234 50.05 %
Bisulfite_reads G2A 403182224 48.05 % 202457990 48.26 % 200724234 47.84 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 349552413
Average Unique 83.32 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 33145296266 38.73 % 12712128555 29.71 % 20433167711 47.75 %
Base Counts Overall C 9276830628 10.84 % 411395774 0.96 % 8865434854 20.72 %
Base Counts Overall G 9356078105 10.93 % 8965202282 20.95 % 390875823 0.91 %
Base Counts Overall T 32927645024 38.47 % 20266173119 47.36 % 12661471905 29.59 %
Base Counts Overall N 882047037 1.03 % 439048800 1.03 % 442998237 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9988769056424789
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 400817363



Mapping Quality

Mapping Quality Histogram
UMCG00015.Bisulfite-Seq.DNA_Methylation.EGAX00001345069_9.mapq.png



Read Length

Read Length Reads
101 419548515
101 419548515



Insert Size Plot

Insert Size Histogram
UMCG00015.Bisulfite-Seq.DNA_Methylation.EGAX00001345069_9.isize.png