/EXTERNAL BLUEPRINT/mapping_coverage/K006384_K006397_20_lane_gembs
BACK
SAMPLE K006384_K006397_20_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1840986734 |
100% |
165224161539 |
100% |
| Mapped |
1821462443 |
98.94 % |
163252208148 |
98.81 % |
| Passed |
1426980163 |
77.51 % |
123409497868 |
74.69 % |
| NotPassed |
394482280 |
21.43 % |
39842710280 |
24.11 % |
| |
|
|
|
|
| LowMAPQ |
330799182 |
17.97 % |
33410717382 |
20.22 % |
| MateUnmapped |
19524291 |
1.06 % |
1971953391 |
1.19 % |
| Duplicate |
23524530 |
1.28 % |
2375977530 |
1.44 % |
| BadOrientation |
98 |
0.00 % |
9898 |
0.00 % |
| LargeInsertSize |
72360 |
0.00 % |
7308360 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
40086110 |
2.18 % |
4048697110 |
2.45 % |
| Unmapped |
19524291 |
1.06 % |
1971953391 |
1.19 % |
Base Level Counts
| Bases |
# |
% |
| Total |
144113960395 |
100% |
| Passed |
115977256268 |
80.48 % |
| Trimmed |
6155917271 |
4.27 % |
| Clipped |
152240774 |
0.11 % |
| Overlapping |
20552221753 |
14.26 % |
| LowQuality |
1276324329 |
0.89 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |