/EXTERNAL BLUEPRINT/methylation/K006384_K006397_20_lane_gembs
BACK
SAMPLE K006384_K006397_20_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26906885 |
24293097 |
90.29 % |
| NonRefCpG |
256835 |
190597 |
74.21 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6445433 |
12.14 % |
5736329 |
11.54 % |
41245 |
8.46 % |
21638 |
5.42 % |
| Intermediate (0.3-0.7) |
5712426 |
10.76 % |
4891333 |
9.84 % |
67818 |
13.91 % |
43035 |
10.79 % |
| Methylated (0.7-1) |
40921452 |
77.09 % |
39094068 |
78.63 % |
378511 |
77.63 % |
334340 |
83.79 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.900 |
|
0.900 |
|
0.890 |
|
0.910 |
|