/EXTERNAL BLUEPRINT/mapping_coverage/K010506_1_lane_gembs
BACK
SAMPLE K010506_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
668221362 |
100% |
60060390631 |
100% |
| Mapped |
661542742 |
99.00 % |
59385850011 |
98.88 % |
| Passed |
560211061 |
83.84 % |
49151350230 |
81.84 % |
| NotPassed |
101331681 |
15.16 % |
10234499781 |
17.04 % |
| |
|
|
|
|
| LowMAPQ |
87021576 |
13.02 % |
8789179176 |
14.63 % |
| MateUnmapped |
6678620 |
1.00 % |
674540620 |
1.12 % |
| Duplicate |
1760326 |
0.26 % |
177792926 |
0.30 % |
| BadOrientation |
24 |
0.00 % |
2424 |
0.00 % |
| LargeInsertSize |
3924 |
0.00 % |
396324 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12545831 |
1.88 % |
1267128931 |
2.11 % |
| Unmapped |
6678620 |
1.00 % |
674540620 |
1.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
56576422297 |
100% |
| Passed |
46088679986 |
81.46 % |
| Trimmed |
2429782411 |
4.29 % |
| Clipped |
75028495 |
0.13 % |
| Overlapping |
7350043572 |
12.99 % |
| LowQuality |
632887833 |
1.12 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |