/EXTERNAL BLUEPRINT/K006276_K006280_11_lane_gembs

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SAMPLE K006276_K006280_11_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1823225928 100.00 % 911612964 100.00 % 911612964 100.00 %
General Reads 1757451884 96.39 % 881992171 96.75 % 875459713 96.03 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 18401621 1.01 % 9230188 1.01 % 9171433 1.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 47372423 2.60 % 20390605 2.24 % 26981818 2.96 %
Bisulfite_reads C2T 932551118 51.15 % 468080912 51.35 % 464470206 50.95 %
Bisulfite_reads G2A 843302387 46.25 % 423141447 46.42 % 420160940 46.09 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 705172539
Average Unique 77.35 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 66234907644 35.62 % 26345896753 28.33 % 39889010891 42.90 %
Base Counts Overall C 25672266461 13.80 % 1351014572 1.45 % 24321251889 26.16 %
Base Counts Overall G 26083637321 14.03 % 24774058683 26.64 % 1309578638 1.41 %
Base Counts Overall T 65853379714 35.41 % 39574487927 42.56 % 26278891787 28.26 %
Base Counts Overall N 2124853516 1.14 % 939064393 1.01 % 1185789123 1.28 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9993689605691257
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 857671041



Mapping Quality

Mapping Quality Histogram
K006276_K006280_11_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006276_K006280_11_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
T11_8.Bisulfite-Seq.DNA_Methylation.EGAX00001128258
T11_8.Bisulfite-Seq.DNA_Methylation.EGAX00001128264