/EXTERNAL BLUEPRINT/K006276_K006280_11_lane_gembs/T11_8.Bisulfite-Seq.DNA_Methylation.EGAX00001128258

BACK

SAMPLE K006276_K006280_11_lane_gembs LANE T11_8.Bisulfite-Seq.DNA_Methylation.EGAX00001128258

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 807673348 100.00 % 403836674 100.00 % 403836674 100.00 %
General Reads 784672559 97.15 % 393725543 97.50 % 390947016 96.81 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9185876 1.14 % 4606922 1.14 % 4578954 1.13 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 13814913 1.71 % 5504209 1.36 % 8310704 2.06 %
Bisulfite_reads C2T 420989509 52.12 % 211309965 52.33 % 209679544 51.92 %
Bisulfite_reads G2A 372868926 46.17 % 187022500 46.31 % 185846426 46.02 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 303313861
Average Unique 75.11 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 28563649908 34.67 % 11797497495 28.64 % 16766152413 40.70 %
Base Counts Overall C 12127354430 14.72 % 567416335 1.38 % 11559938095 28.06 %
Base Counts Overall G 12287869713 14.92 % 11731459145 28.48 % 556410568 1.35 %
Base Counts Overall T 28486141582 34.58 % 16689864186 40.52 % 11796277396 28.64 %
Base Counts Overall N 917665863 1.11 % 405103587 0.98 % 512562276 1.24 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9993474549961812
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 379994139



Mapping Quality

Mapping Quality Histogram
T11_8.Bisulfite-Seq.DNA_Methylation.EGAX00001128258.mapq.png



Read Length

Read Length Reads
101 403836674
101 403836674



Insert Size Plot

Insert Size Histogram
T11_8.Bisulfite-Seq.DNA_Methylation.EGAX00001128258.isize.png