/EXTERNAL BLUEPRINT/K006276_K006280_11_lane_gembs/T11_8.Bisulfite-Seq.DNA_Methylation.EGAX00001128264

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SAMPLE K006276_K006280_11_lane_gembs LANE T11_8.Bisulfite-Seq.DNA_Methylation.EGAX00001128264

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1015552580 100.00 % 507776290 100.00 % 507776290 100.00 %
General Reads 972779325 95.79 % 488266628 96.16 % 484512697 95.42 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9215745 0.91 % 4623266 0.91 % 4592479 0.90 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 33557510 3.30 % 14886396 2.93 % 18671114 3.68 %
Bisulfite_reads C2T 511561609 50.37 % 256770947 50.57 % 254790662 50.18 %
Bisulfite_reads G2A 470433461 46.32 % 236118947 46.50 % 234314514 46.15 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 401858678
Average Unique 79.14 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 37671257736 36.37 % 14548399258 28.09 % 23122858478 44.64 %
Base Counts Overall C 13544912031 13.08 % 783598237 1.51 % 12761313794 24.64 %
Base Counts Overall G 13795767608 13.32 % 13042599538 25.18 % 753168070 1.45 %
Base Counts Overall T 37367238132 36.07 % 22884623741 44.18 % 14482614391 27.96 %
Base Counts Overall N 1207187653 1.17 % 533960806 1.03 % 673226847 1.30 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9993895972425241
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 477676902



Mapping Quality

Mapping Quality Histogram
T11_8.Bisulfite-Seq.DNA_Methylation.EGAX00001128264.mapq.png



Read Length

Read Length Reads
101 507776290
101 507776290



Insert Size Plot

Insert Size Histogram
T11_8.Bisulfite-Seq.DNA_Methylation.EGAX00001128264.isize.png