/EXTERNAL BLUEPRINT/mapping_coverage/K006276_K006280_11_lane_gembs
BACK
SAMPLE K006276_K006280_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1723975844 |
100% |
157449924007 |
100% |
| Mapped |
1704315575 |
98.86 % |
155464236838 |
98.74 % |
| Passed |
1339924536 |
77.72 % |
118660741899 |
75.36 % |
| NotPassed |
364391039 |
21.14 % |
36803494939 |
23.37 % |
| |
|
|
|
|
| LowMAPQ |
301297258 |
17.48 % |
30431023058 |
19.33 % |
| MateUnmapped |
19660269 |
1.14 % |
1985687169 |
1.26 % |
| Duplicate |
33503404 |
1.94 % |
3383843804 |
2.15 % |
| BadOrientation |
38 |
0.00 % |
3838 |
0.00 % |
| LargeInsertSize |
45928 |
0.00 % |
4638728 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
29544411 |
1.71 % |
2983985511 |
1.90 % |
| Unmapped |
19660269 |
1.14 % |
1985687169 |
1.26 % |
Base Level Counts
| Bases |
# |
% |
| Total |
135324911206 |
100% |
| Passed |
110389696435 |
81.57 % |
| Trimmed |
5794205681 |
4.28 % |
| Clipped |
235896682 |
0.17 % |
| Overlapping |
16428272625 |
12.14 % |
| LowQuality |
2476839783 |
1.83 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |