/EXTERNAL BLUEPRINT/K006370_15_lane_gembs/PB100713.Bisulfite-Seq.DNA_Methylation.EGAX00001340344_15

BACK

SAMPLE K006370_15_lane_gembs LANE PB100713.Bisulfite-Seq.DNA_Methylation.EGAX00001340344_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 968816342 100.00 % 484408171 100.00 % 484408171 100.00 %
General Reads 895238537 92.41 % 448448604 92.58 % 446789933 92.23 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 26067092 2.69 % 13048088 2.69 % 13019004 2.69 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 47510713 4.90 % 22911479 4.73 % 24599234 5.08 %
Bisulfite_reads C2T 502657453 51.88 % 251901841 52.00 % 250755612 51.77 %
Bisulfite_reads G2A 418648176 43.21 % 209594851 43.27 % 209053325 43.16 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 330782986
Average Unique 68.29 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 33298032955 33.70 % 14262725878 28.87 % 19035307077 38.53 %
Base Counts Overall C 15682107332 15.87 % 1118808668 2.26 % 14563298664 29.47 %
Base Counts Overall G 15788044165 15.98 % 14673223011 29.70 % 1114821154 2.26 %
Base Counts Overall T 33060079729 33.46 % 18863890313 38.18 % 14196189416 28.73 %
Base Counts Overall N 991002703 1.00 % 490985572 0.99 % 500017131 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992144774737747
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 436196138



Mapping Quality

Mapping Quality Histogram
PB100713.Bisulfite-Seq.DNA_Methylation.EGAX00001340344_15.mapq.png



Read Length

Read Length Reads
101 484408171
101 484408171



Insert Size Plot

Insert Size Histogram
PB100713.Bisulfite-Seq.DNA_Methylation.EGAX00001340344_15.isize.png