/EXTERNAL BLUEPRINT/mapping_coverage/K006370_15_lane_gembs
BACK
SAMPLE K006370_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
874244104 |
100% |
75684799287 |
100% |
| Mapped |
864652005 |
98.90 % |
74715997288 |
98.72 % |
| Passed |
602375892 |
68.90 % |
48226109875 |
63.72 % |
| NotPassed |
262276113 |
30.00 % |
26489887413 |
35.00 % |
| |
|
|
|
|
| LowMAPQ |
218645058 |
25.01 % |
22083150858 |
29.18 % |
| MateUnmapped |
9592099 |
1.10 % |
968801999 |
1.28 % |
| Duplicate |
21080585 |
2.41 % |
2129139085 |
2.81 % |
| BadOrientation |
96 |
0.00 % |
9696 |
0.00 % |
| LargeInsertSize |
74218 |
0.01 % |
7496018 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
22476156 |
2.57 % |
2270091756 |
3.00 % |
| Unmapped |
9592099 |
1.10 % |
968801999 |
1.28 % |
Base Level Counts
| Bases |
# |
% |
| Total |
60831253337 |
100% |
| Passed |
45383461072 |
74.61 % |
| Trimmed |
2493176868 |
4.10 % |
| Clipped |
59216608 |
0.10 % |
| Overlapping |
12545926854 |
20.62 % |
| LowQuality |
349471935 |
0.57 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |