/EXTERNAL BLUEPRINT/methylation/K006370_15_lane_gembs

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SAMPLE K006370_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25435849 14609623 57.44 %
NonRefCpG 370828 100222 27.03 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006370_15_lane_gembs_coverage_refCpG.png ./IMG//K006370_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006370_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006370_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006370_15_lane_gembs_quality_refcpg.png ./IMG//K006370_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006370_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5743879 14.28 % 3264670 12.10 % 116316 21.20 % 19175 9.00 %
Intermediate (0.3-0.7) 7398795 18.39 % 3397290 12.59 % 144756 26.38 % 35547 16.69 %
Methylated (0.7-1) 27087925 67.33 % 20320766 75.31 % 287577 52.42 % 158267 74.31 %
Median Methylation 0.830 0.880 0.720 0.870