/EXTERNAL BLUEPRINT/K006335_6_lane_gembs/V156.Bisulfite-Seq.DNA_Methylation.EGAX00001273467_6

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SAMPLE K006335_6_lane_gembs LANE V156.Bisulfite-Seq.DNA_Methylation.EGAX00001273467_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2007697152 100.00 % 1003848576 100.00 % 1003848576 100.00 %
General Reads 1897156759 94.49 % 952696986 94.90 % 944459773 94.08 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 32464510 1.62 % 16289730 1.62 % 16174780 1.61 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 78075883 3.89 % 34861860 3.47 % 43214023 4.30 %
Bisulfite_reads C2T 1000958156 49.86 % 502623356 50.07 % 498334800 49.64 %
Bisulfite_reads G2A 928663113 46.26 % 466363360 46.46 % 462299753 46.05 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 793948039
Average Unique 79.09 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 76164188680 37.19 % 28805094260 28.13 % 47359094420 46.25 %
Base Counts Overall C 25260194948 12.33 % 1162873273 1.14 % 24097321675 23.53 %
Base Counts Overall G 25818828187 12.61 % 24714670103 24.14 % 1104158084 1.08 %
Base Counts Overall T 75463200604 36.85 % 46682327956 45.59 % 28780872648 28.11 %
Base Counts Overall N 2078697085 1.02 % 1027589160 1.00 % 1051107925 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989987257306339
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 933372195



Mapping Quality

Mapping Quality Histogram
V156.Bisulfite-Seq.DNA_Methylation.EGAX00001273467_6.mapq.png



Read Length

Read Length Reads
101 1003848576
101 1003848576



Insert Size Plot

Insert Size Histogram
V156.Bisulfite-Seq.DNA_Methylation.EGAX00001273467_6.isize.png