/EXTERNAL BLUEPRINT/mapping_coverage/K006335_6_lane_gembs
BACK
SAMPLE K006335_6_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1820724461 |
100% |
156571279607 |
100% |
| Mapped |
1799783149 |
98.85 % |
154456207095 |
98.65 % |
| Passed |
1419536797 |
77.97 % |
116051325543 |
74.12 % |
| NotPassed |
380246352 |
20.88 % |
38404881552 |
24.53 % |
| |
|
|
|
|
| LowMAPQ |
280000592 |
15.38 % |
28280059792 |
18.06 % |
| MateUnmapped |
20941312 |
1.15 % |
2115072512 |
1.35 % |
| Duplicate |
76609405 |
4.21 % |
7737549905 |
4.94 % |
| BadOrientation |
64 |
0.00 % |
6464 |
0.00 % |
| LargeInsertSize |
15522 |
0.00 % |
1567722 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
23620769 |
1.30 % |
2385697669 |
1.52 % |
| Unmapped |
20941312 |
1.15 % |
2115072512 |
1.35 % |
Base Level Counts
| Bases |
# |
% |
| Total |
143367036408 |
100% |
| Passed |
108690077075 |
75.81 % |
| Trimmed |
5977359368 |
4.17 % |
| Clipped |
181508621 |
0.13 % |
| Overlapping |
27134202244 |
18.93 % |
| LowQuality |
1383889100 |
0.97 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |