/EXTERNAL BLUEPRINT/methylation/K006335_6_lane_gembs

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SAMPLE K006335_6_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26853153 22093874 82.28 %
NonRefCpG 199446 77571 38.89 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006335_6_lane_gembs_coverage_refCpG.png ./IMG//K006335_6_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006335_6_lane_gembs_coverage_nonRefCpG.png ./IMG//K006335_6_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006335_6_lane_gembs_quality_refcpg.png ./IMG//K006335_6_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006335_6_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9230649 17.78 % 7714209 16.69 % 104485 28.22 % 38205 16.96 %
Intermediate (0.3-0.7) 13932424 26.84 % 11556575 25.00 % 113963 30.78 % 68626 30.46 %
Methylated (0.7-1) 28743118 55.38 % 26954729 58.31 % 151838 41.01 % 118454 52.58 %
Median Methylation 0.740 0.760 0.600 0.720