/EXTERNAL BLUEPRINT/mapping_coverage/K006419_14_lane_gembs
BACK
SAMPLE K006419_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1188372278 |
100% |
108490243301 |
100% |
| Mapped |
1176842880 |
99.03 % |
107325774103 |
98.93 % |
| Passed |
1009860949 |
84.98 % |
90460599072 |
83.38 % |
| NotPassed |
166981931 |
14.05 % |
16865175031 |
15.55 % |
| |
|
|
|
|
| LowMAPQ |
144755906 |
12.18 % |
14620346506 |
13.48 % |
| MateUnmapped |
11529398 |
0.97 % |
1164469198 |
1.07 % |
| Duplicate |
4991925 |
0.42 % |
504184425 |
0.46 % |
| BadOrientation |
24 |
0.00 % |
2424 |
0.00 % |
| LargeInsertSize |
4812 |
0.00 % |
486012 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17229264 |
1.45 % |
1740155664 |
1.60 % |
| Unmapped |
11529398 |
0.97 % |
1164469198 |
1.07 % |
Base Level Counts
| Bases |
# |
% |
| Total |
101988725764 |
100% |
| Passed |
84900363442 |
83.24 % |
| Trimmed |
4430821032 |
4.34 % |
| Clipped |
123721843 |
0.12 % |
| Overlapping |
11404404849 |
11.18 % |
| LowQuality |
1129414598 |
1.11 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |